AU686394B2 - Creation of Inventions and Patents with Artificial Intelligence

AU686394B2 – Human monoclonal antibodies specific to cell cycle independent glioma surface antigen
– Google Patents

AU686394B2 – Human monoclonal antibodies specific to cell cycle independent glioma surface antigen
– Google Patents
Human monoclonal antibodies specific to cell cycle independent glioma surface antigen

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AU686394B2

AU686394B2
AU27092/95A
AU2709295A
AU686394B2
AU 686394 B2
AU686394 B2
AU 686394B2
AU 27092/95 A
AU27092/95 A
AU 27092/95A
AU 2709295 A
AU2709295 A
AU 2709295A
AU 686394 B2
AU686394 B2
AU 686394B2
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seq
amino acid
immunoglobulin
glioma
chain
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1994-06-21
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AU2709295A
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Michael D. Dan
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Viventia Bio Inc

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Viventia Biotech Inc
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1994-06-21
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1995-06-16
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1998-02-05

1995-06-16
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1996-01-15
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1998-02-05
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1999-06-10
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Assignors: DAN, MICHAEL D.

2001-06-14
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C—CHEMISTRY; METALLURGY

C07—ORGANIC CHEMISTRY

C07K—PEPTIDES

C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies

C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans

C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants

C07K16/30—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells

C07K16/3053—Skin, nerves, brain

A—HUMAN NECESSITIES

A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE

A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES

A61K38/00—Medicinal preparations containing peptides

Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS

Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC

Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS

Y10S530/00—Chemistry: natural resins or derivatives; peptides or proteins; lignins or reaction products thereof

Y10S530/863—Chemistry: natural resins or derivatives; peptides or proteins; lignins or reaction products thereof involving IgM

Y10S530/864—Monoclonal

Y10S530/865—Human

Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC

Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS

Y10S530/00—Chemistry: natural resins or derivatives; peptides or proteins; lignins or reaction products thereof

Y10S530/866—Chemistry: natural resins or derivatives; peptides or proteins; lignins or reaction products thereof involving immunoglobulin or antibody fragment, e.g. fab’, fab, fv, fc, heavy chain or light chain

Abstract

The variable chains of two human monoclonal antibodies (HMAbs) of the IgM isotype are characterized by elucidation of cDNAs encoding those chains. The HMAbs are specific against cell cycle independent, glioma-associated antigen, and the antibodies do not recognize cultured normal human astrocytes. Immunoconjugates based on the sequences identified should target both proliferating and non-proliferating glioma cells in vivo, thus providing a valuable adjunctive therapy in the treatment of these tumors.

Description

WO 95/35374 PCT/CA95/00361 -1- HUMAN MONOCLONAL ANTIBODIES SPECIFIC TO CELL CYCLE INDEPENDENT GLIOMA SURFACE ANTIGEN The invention relates to the characterization of monoclonal antibodies (MAbs) of the IgM isotype and cDNAs encoding therefor. In particular, the invention relates to two human MAbs against malignant glioma cell lines.
These human anti-glioma MAbs are of promising clinical value in the treatment of this aggressive brain tumor.
The invention includes the cell surface markers to which these MAbs bind.
Malignant gliomas are the most common of all primary brain tumors. They are also among the most difficult to manage clinically. Depending on their intracranial location, they can grow to a substantial size before causing any symptoms. Their biological behavior is notoriously aggressive, although they rarely metastasize outside of the central nervous system.
Surgery and radiotherapy alone are seldom curative; with the best of care, median survival is under one year.
Moreover, despite major efforts to introduce new adjunctive therapies, the prognosis for patients with malignant gliomas has remained essentially unchanged for the past thirty years.
Many adjunctive therapies, including immunotherapy, are either presently ineffective, or carry an unacceptable risk of serious morbidity. With the development of murine hybridomas by K6hler and Milstein (1975); however, tumor immunodiagnosis and immunotherapy with monoclonal antibodies has emerged as a promising area of investigation.
Studies with murine MAbs have already contributed substantially to the understanding of glioma biology and WO 95/35374 PCT/CA95/00361 -2heterogeneity. These reagents are not suited for clinical application in humans for a variety of reasons.
In contrast, human MAbs offer the possibilities of greater specificity and biological compatibility than their murine counterparts.
Malignant gliomas are neuroepithelial tumors which commonly arise in the cerebral hemispheres. As a group, they include anaplastic astrocytoma, anaplastic oligodendroglioma, anaplastic ependymona, and glioblastoma multiforme. These tumors all possess certain microscopic features in common such as dense cellularity, increased numbers of mitotic figures, nuclear pleomorphism with hyperchromasis, and cellular pleomorphism. In glioblastoma multiforme, the above features are present, as well as necrosis with pseudopalisades, capillary endothelial proliferation with pseudorosette formation, and mesenchymal proliferation.
These tumors are heterogeneous and demonstrate both inter- and intra-tumor variability, which may well be the major determinant of therapeutic resistance. Since few markers exist which are selective for poorly differentiated glioma cells, it would be highly beneficial to selectively target these cells within an otherwise heterogeneous population, as the failure to deplete a tumor of such poorly differentiated cells inevitably results in tumor recurrence.
It is well established that many patients with malignant gliomas are significantly immunosuppressed, especially with regards to cell-mediated functions, although few patients are cachectic. The finding of immunosuppression in the absence of significant systemic wasting would suggest that the former is due to tumorintrinsic mechanisms, rather than a reflection of excessive tumor burden, as is usually the case. Humoral immune mechanisms in patients with malignant gliomas also WO 95/35374 PCT/CA95/00361 appear to be depressed, albeit they remain intact, Malignant gliomas possess many antigens in common with the normal cells from which they were derived. As a result, it is virtually impossible to prepare conventional heteroantisera to glioma tissue without encountering some degree of cross-reactivity with normal adult brain. The shared antigens may be intracellular, membrane associated, or extracellular in nature.
The role of glycolipids and carbohydrate structures in cellular interaction, differentiation, and oncogenesis has received much attention lately. A subclass of glycolipids known as gangliosides may play an important role in the regulation of cellular adhesion and proliferation. When a cell undergoes malignant transformation, there may be subtle qualitative and quantitative changes in the chemistry of its surface gangliosides.
Malignant gliomas are well vascularized tumors.
However, there is a breakdown or total absence of the blood-brain barrier that exists in a normal, healthy brain, in which the brain is normally ‘privileged’, or isolated from the effects of the immune system or other blood-borne agents. Because of this breakdown of the blood-brain barrier in patients with these tumors, the immune system has access to the tumor cells.
Studies with murine MAbs raised against glioma cell lines were reported by Schnegg, et al. (1981) and Bourdon, et al. (1983). Both groups immunized mice with cultured human glioma cell lines, and fused spleen cells with the mouse myeloma lines P3X63-Ag8 or P3X63-Ag8.653, respectively. The MAbs BF7, GE2, described by Schnegg et al. (1981) appear to be relatively glioma-restricted, whereas antibody CG12 (de Tribolet, et al. 1984) reacts WO 95/35374 PCT/CA95/00361 -4with a spectrum of gliomas, melanomas, and neuroblastomas. Antibody 81C6 was produced and characterized by Bourdon, et al. (1983) and found to react with a glioma-mesenchymal extracellular matrix (GMEM) antigen expressed on gliomas, neuroblastomas, melanomas, sarcomas, and cultured fibroblasts. In addition to the above, the GMEM antigen was also found in normal liver sinusoids, spleen red pulp sinusoids, kidney medullary tubule interstitium, and glomerular mesangium.
Whereas absorption of CG12 with normal adult and fetal brain abolished binding activity, neither BF7, GE2, nor 81C6 were affected by the same treatment.
Reports of human monoclonal antibodies (HMAbs) from patients with malignant gliomas have appeared in the literature. However, none of these antibodies have been well characterized.
Sikora, et al. (1982) reported the production of HMAbs reactive to 0.25% glutaraldehyde-fixed glioma cells. These investigators obtained intratumoral lymphocytes from 12 patients undergoing craniotomy for malignant glioma and fused them to the EBNA 8-azaguanine-resistant human lymphoblastoid line LICR-LON- HMy2, which is known to secrete gamma and lambda chains.
A total of 71 hybridomas were obtained from 5 patients.
No subcloning experiments were reported and no demonstration or proof of the monoclonality of the hybridomas is given. This study also reported crossreactivity of the HMAbs to other tumor cell lines. The disadvantages of the requirement for intratumoral cells from the human brain as the starting material are clear.
In a subsequent study by Sikora et al. (1983), the authors concluded that, for the HMAb singled out for study, this HMAb was of a low affinity because of the high concentrations necessary to demonstrate reactivity WO 95/35374 PCT/CA95/00361 with targets.
The present inventor and coworkers reported the production of five hybridoma cell lines each producing an anti-glioma HMAb of the IgM isotype (Dan, et al. 1992).
These five hybridomas were generated by the somatic fusion of peripheral blood lymphocytes from four patients having astrocytic tumors, with a human myeloma-like cell line, TM-H2-SP2.
The production of these five hybridomas was based on the principle that human patients with neurological tumors should possess circulating B lymphocytes with anti-glioma specificities, and based on the principle that tumor-reactive antibodies derived from glioma patients should recognize common, non-allelic determinants in human gliomas which might differ in specificities and distribution from those recognized by xenogeneic systems.
Accordingly, these five hybridomas were derived from fusion of a human myeloma-like line and B cells obtained from human patients suffering from gliomas. By appropriate culturing of the resultant hybridomas, effective HMAbs to human gliomas were obtained in useful quantities.
A remarkable characteristic of the human MAbs obtained is the high degree of similarity amongst them despite being derived from cells obtained from four different tumor patients, each having a different tumor type, history, or stage of tumor development. Also, these HMAbs exhibit increased compatibility with and increased sensitivity for recognition of human target cells as compared to the prior art. The HMAbs do not bind to normal human astrocytes.
WO 95/35374 PCT/CA95/00361 These HMAbs are useful in diagnostic imaging for the radiolocalization of neurological tumors, and in immunotherapy by either direct action or by linking these HMAbs to chemotherapeutics which can then be targeted directly to the tumor cells. To be of clinical value, a human MAb should meet the following criteria: 1) label the surface, i.e. bind to, live tumor cells, 2) recognize a cell cycle independent tumor specific antigen, and 3) bind equally well to tumor cells in vitro regardless of their culture viability, growth characteristics, or culture density. Of the five anti-glioma HMAbs obtained, at least two appear to satisfy these criteria and have been characterized. These two HMAbs are designated BT34/A5 and BT32/A6.
The invention provides cDNA sequences coding for the light and heavy chains of the variable regions of the HMAbs BT34/A5 and BT32/A6. The invention includes the corresponding amino acid sequences and human MAbs of the IgM isotype having the characterized variable region chains as well as other proteins or protein conjugates having these chains. In particular, the invention includes any protein or protein conjugate immunoconjugate) having variable light and heavy chains with hypervariable regions (complementarity determining regions or CDR) the same as or at least 90% homologous with the hypervariable regions of the light and heavy chains of the invention. As the skilled person will appreciate, immunoconjugates include drugs, toxins, cytokines, radionuclides, enzymes and other diagnostic or therapeutic molecules conjugated to the antigen binding molecular structure. The invention also includes a cell surface marker or antigen to which a HMAb of the invention binds.
1_ WO 95/35374 PCT/I’CA95/00361 -7- Preparation of Human MAbs Cell fusions were performed, to make hybridomas from the human myeloma-like cell line TM-H2-SP2 and peripheral B lymphocytes (PBL) obtained from eight different brain tumor patients, coded BT-24, BT-27, BT-32, BT-34, BT-38, BT-39, BT-54 and BT-55. These patients, both male and female, ranged from 5 to 55 years of age and had a variety of neuroectodermal tumors including fibrilla.y astrocytoma, oligoastrocytoma, primitive neuroectodermal tumor, and glioblastoma. The fusions were performed as previously described (Dan, et al. 1992). Incubation of the cells in the 96-microwell trays was conducted using fresh tissue culture media and fetal calf serum (FCS), supplemented with L-glutamine (292 mg/l) and L-asparagine (44 mg/l). The hybridoma outgrowth, defined as the number of microwells containing macroscopic colonies of greater than 50-100 cells (visible to the naked eye) divided by the total number seeded, and expressed as a percentage, ranged from 0-19.5%.
The number of PBL in all samples available for fusion varied from 6.0 x 106 to 5.8 x 107. Although the ratio of myeloma cells to lymphocytes remained constant at 1:4 for each fusion, the plating density that was used ranged from 1.0 x 105 to 2.5 x 10 s myeloma cells per ml of fusion mixture. The lower plating density was chosen in some fusions in attempts to encourage better initial monoclonality, whereas the higher plating density seemed to favor improved hybridoma outgrowth. The concentration of polyethylene glycol was 50% in all fusions.
Typically, discernable hybridoma growth appeared from 4 to 6 weeks after a fusion, and new growth in microwells often continued to be observed for several weeks thereafter. In general, those colonies of hybridomas which appeared earliest tended to be the most
I
WO 95/35374 PCT/CA95/00361 -8stable. Not all macroscopic colonies visible at the end of the 96 microwell (0.28 cm 2 /well) culture period could be successfully propagated to amounts suitable for growth in 24 well dishes (2.01 cm 2 /well). In fusions with BT- 54, for example, of the seven colonies which originally grew in 96 microwells, only one was capable of prolonged growth in vitro. Instances of hybridoma growth failure occurring later than three months post-fusion were not observed.
The hybridomas were screened for the presence of human immunoglobulin and reactivity with 3M KC1 extracts of autologous tumors, or glutaraldehyde-fixed glioma cell lines.
A total of 1,121 wells containing growth of putative hybridomas from the fusions described were screened, of which 162 were found to react with tumor extracts, or glioma cell lines. Two of the fusions, namely BT-27 and BT-32, were screened for reactivity with several glioma cell lines, and instances were found of individual microwells which tested positive in multiple ELISAs (enzyme linked immunosorbent assays).
In the last two fusions, BT-54 and BT-55, the ELISA was modified to detect only those microwells which contained reactive IgM species. This modification was accomplished by substituting culture supernatant from hybridoma BT27/2D2 for TM-H2 as a control, and adding alkaline phosphatase conjugated goat anti-human IgM as a second antibody. The reasoning was that analysis of immunoglobulin chains present in 74 hybridomas from fusions BT-24, BT-27, BT-32 and BT-34, indicated that all 34 contained IgM, and a careful study of a few of these hybridomas indicated that the IgM alone was responsible for anti-tumor activity. Hybridoma BT27/2D2, derived from cells of patient BT-27, which was consistently WO 95/35374 PCT/CA95/00361 -9negative in various ELISAs of immune reactivity, was chosen as a non-specific IgM control (1-4 pg/ml).
A total of nine high immunoglobulin-producing hybridomas from the fusion series described were screened for reactivity with the human glioma line SK-MG-1, using the FACS-III Flow Cytometer. Five supernatants derived from the hybridomas, designated as BT27/1A2, BT27/2A3, BT32/A6, BT34/A5 and BT54/B8, were found to label this particular glioma cell line. All five contained tumorreactive IgM species. Thus, from eight fusions and a total of 59 hybridomas which were macroscopically visible at six weeks, only five reacted with the cell surface of a glioma cell line, and were capable of sustained growth in culture. It was noted that BT27/2A3 labelling of SK-MG-1 is enhanced if the latter is maintained at a high cell density prior to testing.
All five hybridoma supernatants were found to contain A heavy chains. Only BT34/A5 contained lambda light chains, the other four HMAbs contained kappa light chains. Each HMAb was shown to label the cell surface of human glioma line SK-MG-1 using flow cytometric (FCM) analysis and FITC-conjugated goat anti-human IgM (IgG fraction, A chain specific; Cappel Laboratories, Cochranville, PA), indicating that the IgM molecules were binding to the tumor cell surface membrane (data not shown).
After approximately six months )f maintenance in culture, the estimated IgM concentration for BT27/1A2 was gg/ml; for BT27/2A3, it was 44 Ag/ml, for BT32/A6 Ag/ml, for BT34/A5 2.4 Ag/ml, and for BT54/B8 22.4 Ag/ml.
After a further 6 months in continuous culture, IgM production levels were found to be comparable.
Three of the five HMAbs were tested by ELISA for i Ib~ ura~ lllll~-~ WO 95/35374 PCT/CA95/00361 their relative reactivities. At the initial concentration of supernatant fluid which was tested, the order of reactivity was BT27/2A3 BT27/1A2 BT32/A6, which is the same as the order of their respective IgM concentrations. The final titer, analyzed by ELISA, which gave O.D. readings significantly higher than control IgM baseline was 1:16 for BT27/2A3, 1:4 for BT27/1A2, and 1:2 for BT32/A6. Since this assay involves the addition of an equal volume of PBS, 50 Al, in the initial step, the initial dilution tested in the ELISA was 1:2. There was no evidence of an initial plateau phase in any of the dilution curves, indicating that under the ELISA conditions which were used, the quantity of tumor extract was not a limiting factor.
Determination of Monoclonality Genomic DNA was isolated from TM-H2-SP2, BT27/1A2, BT27/2A3, BT32/A6, and BT27/2D2 cells according to Maniatis, et al. (1982). Ten Ag of DNA were digested overnight at 37 0 C with BamHi and HindIII restriction enzymes units/pg DNA; Boehinger-Mannheim, West Germany) according to the manufacturer’s specified conditions. After digestion, the DNA as subjected to electrophoresis on a 0.8% agarose gel (Maniatis, et al. 1982), and transferred to a Genescreen Plus membrane (NEN, Boston, MA) by the usual method. Following prehybridization with herring sperm DNA (Boehinger- Mannheim, West Germany), the Southern blot was hybridized (Kaufmann, et al. 1985) overnight at 65 0 C with a 32
P-
labelled JH probe (Oncor Inc., Gaithersburg, MD), specific activity of 5-6 x 108/g. The probe includes the entire human JH region, and totals 5.6 kbp (Ravetch, et al. 1981). Following washing, the blot was exposed to Kodak X-ray film with intensifying screens at -70 0
C.
Southern blot analysis revealed that hybridomas WO 95/35374 PCT/CA95/00361 11– BT27/1A2, BT27/2A3, and BT32/A6, each possess two rearranged bands bearing homology to the JH gene region.
Hybridoma BT27/2D2 appeared to possess three such bands.
The B cell fusion partner used in these experiments, TM- H2-SP2, had only one band and an apparent deletion.
Furthermore, there is no evidence for a TM-H2-SP2 type of rearrangement of the JH region in any of the “hybridomas”. As a control, normal PBL DNA, which is composed if 60-70% T cell derived genetic material, was found to yield a blot profile identical to placental (germline) DNA. There was also a common low MW band containing an unrelated homologous sequence present in each of the samples.
The Ig heavy chain gene is located on chromosome 14 in the human, and is composed of four distinct elements known as V, (variable), D, (diversity), J, (joining), and C, (constant) regions. In germline DNA these regions are separated by intervening sequences which are spliced out once the cell becomes committed to B cell differentiation.
Originally it was thought that only one chromosome underwent rearrangement while the other remained in the germline configuration (the principle of allelic exclusion). In the mouse heavy chain gene, however, the second chromosome is essentially always rearranged (Nottenburg and Weissman, 1981). It was therefore proposed that for a given cell, the probability of a functional rearrangement had to be very low (Coleclough, et al. 1981). One would thus encounter the situation of two non-functional, or one functional and one nonfunctional, but very rarely two functional heavy chain rearrangements per cell. These observations are valid for the mouse, and seem to be valid for higher mammalian species as well (Korsmeyer, et al. 1983).
I
WO 95/35374 PCT/CA95/00361 -12- The heavy chain probe used in these experiments spans the entire human germline JH region. In situations where there has been rearrangement of germline DNA, digestion with the restriction enzymes BamHI and HindIII will produce DNA fragments that differ in length from the 5.6 kbp J probe. The finding of two such fragments in each of the hybridoma lanes indicates that two heavy chain rearrangements are detected for each hybridoma which is consistent with a monoclonal origin for each of the three hybridomas.
Flow Cytometry Flow cytometric analysis of cultured human cell lines and strains was performed with the cells grown to confluence and maintained in that state with exchanges of fresh media at least 24 hrs prior to labelling.
Suspension culture cell lines were maintained and used from high cell density cultures, i.e. near saturation.
Screening was carried out according to the method outlined above in parallel on two or more separate occasions with established positive cell lines to verify maintenance of immune reactivity of the HMAbs.
Results of FCM screening with human cell lines are summarized in Tables 1 and 2. Several different classes of neuroectodermal, and non-neuroectodermal tumors and tissues were tested. All five HMAbs demonstrated a similar pattern of reactivity for the 30 cell lines which were studied, with few notable exceptions. For example, the human epithelial cervical carcinoma cell line, ME180, reacted with BT27/1A2 and BT27/2A3, but not BT32/A6.
Antibodies BT34/A5 and BT54/B8 both failed to react with the glioma cell line SKI-1, but labeled melanoma line M-4.
Only HMAb BT32/A6 had a singular pattern of reactivity. Antibodies BT27/1A2 and BT27/2A3 exhibited t- WO 9)5/35374 PCT/CA95/(0036 i -13one pattern of reactivity, and antibodies BT34/A5 and BT54/B8 had another pattern of reactivity, which differed slightly from each other. None of the HMAbs reacted with any of the hematological cell lines which were tested.
Table 1: Reactivity of three HMAbs Tumor Type Glioma Melanoma Neuroblastoma Retinoblastoma Hematological Other Tumors Embryonic Fibroblast Cell Line
SK-MG-I
SK-MG-13 SKI-I1 LN-215 LN-340 U-178 U-373 M-4 IGR-3- IGR-39 IMR-32
SK-N-MC
Y-76
CEM-T*
K-562 d HeLal ME180 C-33A’ SWI1669 SW14179 SW9489 HT2 9 9 J82 h
HEF
WI-38 BT27/1A24 positiveb positive positive negative negative positive positive negative negative negative negative negative negative negative negative negative positive positive negative negative negative negative negative negative negative negative positive positive positive negative negative positive positive negative negative negative positive positive positive negative negative positive positive negative negative negative BT27/2A3 BT32/A6 negative negative negative positive negative negative negative negative positive positive negative negative negative negative negative negative negative negative negative negative positive negative negative negative negative negative negative negative negative negative negative negative Footnotes: *hybridomas, bcells were detected to have bound HMAb above the background level of labelling with control antibody, OT-cell leukemia, ‘chronic myelocytic leukemia, *acute promyelocytic leukemia, fepithelial cervical carcinoma, 9colonic adenocarcinoma, btransitional bladder cell carcinoma, not done.
WO 95/35374 I’CT/CA95/00361 Table 2: Reactivity of HMAbs BT34/A5 and BT54/B8 Tumor Type Glioma Mela .oma Cell Line SK-MG-1 SKI-1 U-373 M-4 Hematological Other Tumors Embryonic Fibroblast CCRF-CEMa K-562 d U-937′ Raji’ HeLab MElBO1 C-33A h SW1417′ SW1463′ J82
J
IMR-90 WI-38 BT34/A5′ positive” negative positive positive negative negative negative negative negative negative negative negative negative negative negative positive negative positive negative positive positive negative BT54/BB BT27/2A3 positive positive positive negative negative negative negative negative negative negative negative
N.D.
N.D.
negative positive negative negative negative negative negative negative negative negative negative negative positive N.D.
negative negative Footnotes: ‘hybridomas, bsee Table 1, OT-cell leukemia, dchronic myelocytic leukemia, ‘acute promyelocytic leukemia, ‘histiocytic lymphoma, monocyte-like, ‘B cell lymphoma, “epithelial cervical carcinoma, ‘colonic adenocarcinoma, Jtransitional bladder cell carcinoma, not done.
Despite some minor differences in the pattern of reactivity against a panel of human tumor cell lines, all five HMAbs appear to be recognizing similar molecular substances, both in terms of biochemical composition and biological distribution even though being derived from four different patients with different tumors.
Immunoperoxidase Staining The antibody BT32/A6 was chosen for an immunoperoxidase staining assay using a panel of tumor cells. Tumor cells were grown on coverslips for 2-3 days in complete medium, washed with PBS and fixed with 2% formaldehyde for 20 minutes at room temp. After being I WO 95/35374 PCT/CA95/00361 washed with PBS, cells were incubated with 1% normal goat serum for 60 minutes. After another wash with PBS, cells were incubated with either 10-20pg/mL MAb or control human myeloma IgM for 120 minutes at room temp. After another wash with PBS, cells were stained with biotinylated goat anti-human IgM for 60 minutes at room temp, then incubated with HRP labeled streptavidin for another 60 minutes, followed by washing with PBS. The peroxidase reaction was initiated using 0.06% diaminobenzidine with 0.01% hydrogen peroxide in 50 mM Tris-HCl buffer, pH 7.0, for 10 minutes. The cells were briefly counterstained with hematoxylin. As shown in Table 3, the staining results largely confirm the flow cytometry results with the exceptions being positive binding of HMAb to melanoma and neuroblastoma cell lines using this assay.
Table 3: Reactivity of HMAb BT32/A6-Peroxidase Staining Tumor Type Cell Line BT32/A6 Glioma SK-MG-1 positive U-373 positive U-118 positive U-87 MG positive Neuroblastoma SK-N-SH positive SK-N-MC positive Melanoma SK-MEL 5 positive SK-MEL 3 positive SK-MEL 28 positive A-375 positive Breast BT-20 positive Carcinoma MDA MB-468 positive MCF-7 positive Colon HT-29 negative Carcinoma SK-COI negative Human WI-38 negative Pibroblast MRC-5 negative WO 95/35374 PC(/CA95/00361 -16- Reactivity with Normal Human Astrocytes Cultured human astrocytes were assessed for labelling with HMAbs. All reagents were checked for immune reactivity against an established positive human glioma cell line (U-373). None of the HMAbs BT27/1A2, BT27/2A3, and BT32/A6 appeared to label cultured astrocytes from two different individuals. Antibodies BT34/A5 and BT54/B8 also failed to label normal human astrocytes obtained from one individual.
Relative Affinity To determine relative antibody affinities of the five HMAbs, a modification of the method of De Bernado and Davies (1987) was used. The results of ELISAs of the five HMAbs with tumor extract from patient BT-37 (glioblastoma multiforme) after either a long (18 hr) or a short (4 hr) incubation at 4 0 C, were expressed in terms of O.D.
measurements. Comparison of the O.D. reading for each HMAb at the two time points indicates that there is a statistically significant (p<0.05) increase in O.D. for BT32/A6 and BT54/B8 with the longer incubation. None of the other 3 HMAbs (BT27/1A2, BT27/2A3, and BT34/A5) showed a significant increase in reactivity after a longer incubation at 4°C. These observations would suggest that BT32/A6 and BT54/B8 behave as a low affinity antibodies at low temperatures. After the long incubation period (18 hrs at 4 0 all five HMAbs confirmed positive (p<0.05) by ELISA when compared to the control. After the short incubation time (4 hrs at 4 0 however, only BT27/1A2, BT27/2A3, and BT34/A5 were significantly positive; BT32/A6 and BT54/B8 did not react significantly, possibly because of their low affinity nature. WO 95/35374 PCT/CA95/00361 -17- Preliminary Antigen Characterization Dot blots of total lipid extracts from cultured neuroectodermal cell lines were examined. LN-340 and M-4 are glioma and melanoma cell lines which have been previously shown to be unreactive with any of the five HMAbs. Compared to control HMAb BT27/2D2, there was some indication of potential reactivity for all five HMAbs when tested against glycolipids from the glioma cell line U-373. As for the glioma line SK-MG-1, all the HMAbs except for BT54/B8 seemed to exhibit some degree of reactivity to the lipid extract, although the quality of these dot blots was not entirely satisfactory. Immunochromatography of total lipid extract prepared from SK-MG-1 glioma cells was performed using BT34/A5 and the parental line, TM-H2, as control. A single specific band with Rf 0.60 was observed. As well, a non-specific band with Rf 0.80 was evident in both the BT34/A5 and TM-H2 lanes. In separate experiments, similar results were obtained for BT27/1A2 and BT27/2A3 compared to BT27/2D2, i.e. a specific band at Rf 0.60. Immunochromatography with HMAb BT54/B8 failed to reveal the presence of any specific banding pattern, but this result is consistent with the dot blot experiment. These results suggest that the HMAbs recognize a determinant of a glycolipid, or ganglioside, which was not detected in association with glycoproteins. Brief Description of the Drawings Figures 1A I are flow cytometric analyses of scraped SK-MG-1 cells. Figures 2A and 2B are flow cytometric analyses of glioma cells permeable to PI labeled with BT32/A6 (Fig. -I WO 95/35374 PCT/CA95/00361 -18- 2B) vs. a control (Fig. 2A). Figure 3 shows ratios of viable to non-viable cells by passaging confluent cultures of SK-MG-1 cells at various split ratios. Figure 4 shows cell growth rates of the various split ratios. Figure 5 shows the relative numbers of cells in each phase of the cell cycle for the various split ratios. The trends shown agree with the increase in growth rate shown in Fig. 4. Figure 6 shows labeling of SK-MG-1 cells by MAb BT32/A6 vs. culture split ratio. Human Monoclonal Antibody BT32/A6 HMAb BT32/A6 was selected for further characterization. Cell culture supernatants of BT32/A6 were prepared by growing the cells in RPMI-1640 medium, supplemented with fetal bovine serum (FBS), 1% L-glutamine and 1% HT (Gibco, Grand Island, NY) either in T175 sq.cm. flasks (Costar, Cambridge, MA), or 3L stir flasks (Kontes, Vineland, NJ). After four or five days of growth, at a cell density 1-2 X 106 per ml, the supernatants were harvested by centrifugation for 10 min. at 500 g. This supernatant was either used directly or concentrated and purified before use. For the concentration of cell culture supernatants, 100,000 molecular weight cut-off tangential flow membranes were used in a minitan concentrator (Millipore, Bradford, MA). The purification of IgM antibody was carried out in column chromatography involving mixed mode ion exchange ABx Baker Inc., OUI~ WO 95/35374 PCT/CA95/00361 -19- Phillipsburg, NJ), Q-Sepharose Fast Flow and Superose-6 (Pharmacia, Uppsala, Sweden). The final concentration of MAb was determined in antigen capture ELISA using standard curve generated with polyclonal human IgM (Cappel Labs., Malvern, PA). As reported (Dan, et al. 1992), FCM analysis of SK- MG-1 glioma cells (originally designated AJ, Pfreundschuh, et al. 1978) revealed the presence of two distinct cell populations, designated as "small" and "large" cells (based on forward scatter profiles). This observation was based on work with SK-MG-1 glioma cells that had been removed from tissue culture flasks by mechanically scraping the cells from the flask. When SK-MG-1 cells are removed with trypsin or EDTA, which are less harsh on the cells, FCM analysis demonstrates only one cell population (results not shown). Fluorescence activated sorting of scraped SK-MG-1 cells revealed that the "small" cells had a 2.0% colony-forming efficiency (CFE), whereas the "large" cells were found to have a CFE of 38.0%, almost times greater. When scraped SK-MG-1 glioma cells were labeled with PI (propidium iodide) alone, an increase in PI fluorescence was observed only among the "small" cells, but not among the "large" cells. Since dead cells will stain with PI, it was concluded that the "large" cells of scraped SK-MG-1 are viable and the "small" cells nonviable. Surface Labeling of Live Cells When the non-viable "small" cells are backgated onto the forward scatter v. 900 scatter profile, they appear as a separate population below the viable "large" cells on the ordinate. An area was defined around the "large" cells (region in Figure 1A, and PI was added to all FCM specimens to further assist with the task of gating on only live and viable SK-MG-1 glioma cells. In Figure 1B, _~II _I WO 95/35374 PCT/CA95/00361 a region marked denotes the SK-MG-1 cells that were unlabeled by PI. The double peak to the right of 'B' represents SK-MG-1 glioma cells which have taken up PI (region and are thus non-viable. The double peak corresponds to the GO/Gi and G 2 /M peaks of the cell cycle, respectively. Figure 1C represents SK-MG-1 cells which were double-gated from region and region and are therefore live and capable of forming colonies in vitro. These cells have been labeled with control MAb. The mean FITC fluorescence of these cells was found to increase by a factor of >360% after addition of HMAb BT32/A6 (Fig.
1D). The human IgM MAb BT32/A6, therefore, labels the surface of live SK-MG-1 glioma cells that are viable and capable of forming colonies in vitro.
Cell Cycle Independent Antigen Expression The expression of the BT32/A6 antigen throughout the cell cycle was studied by gating on SK-MG-1 glioma cells that were permeable to PI (Figure 1B, Region and labeled with MAb BT32/A6. The results, shown in Figure 2B, indicate labeling of tumor cells in both the G 0 and
G
2 /M phases of the cell cycle. There was minimal labeling of SK-MG-1 cells in the S phase of the cell cycle, which is not reflected in the figure.
The observation of labeling throughout each phase of the cell cycle is supported by the finding of increased fluorescence in nearly 100% of viable SK-MG-1 cells. At any time a certain proportion of the SK-MG-1 cells will be in each phase of the cell cycle. The fact that nearly 100% of the cells were labeled must mean that all SK-MG-1 cells in each phase of the cell cycle were labeled by MAb BT32/A6. Thus, the expression of BT32/A6 antigen on the surface of live cells is unaffected by the cell cycle state at the cell passage ratio and culture density of SK- MG-1 which was studied.
I
~IIILl~rm~R~- WO 95/35374 PCT/CA95/00361 -21- Antigen Expression and Culture Split Ratio By passaging confluent cultures of SK-MG-1 glioma cells at split ratios of 0, 1-2, 1:4, 1:8, 1:16, 1:32, and 1:64, then growing the cells under standard conditions for 3 days, significant trends were produced in the following parameters: 1) the ratio of viable to non-viable cells (Figure 2) cell growth rate (Figure 3) and the relative number of cells in G 0 S, and G 2 /M phases of the cell cycle (Figure There was an excellent correlation between culture viability (determined by the ratio of viable to non-viable cells) and cell growth rate (determined by cell number on day 3 expressed as a percentage of cell number on day 0) with r 0.991, and p 0.01.
Against these trends in culture viability, growth rate, and cell cycle stage, no significant trend in MAb BT32/A6 labeling of SK-MG-1 glioma cells as a function of culture split ratio was observed (r -0.303, p 0.05, Figure The data failed to reject the null hypothesis that the slope of the regression line was zero using Student’s t-test. Thus, the MAb BT32/A6 labeling of SK- MG-1 is independent of: 1) culture viability, 2) growth rate, and 3) cell cycle state across the range of passage split ratios which were studied.
Complement Mediated Cytotoxicitv Human glioma (SK-MG-1) cells were washed with RPMI- 1640 medium containing 5% FBS and 5 mM HEPES, pH 7.2.
Fifty Al of SK-MG-1 cell suspension, with 5 x 105 cell/ml, were incubated in round bottom microtiter wells of a 96well plate (Costar, Cambridge, MA) with 50 Al of either medium (control) or different dilutions of MAb (test sample) for 2 hours at room temp. All samples were run in duplicate. The microtiter plate was then centrifuged for WO 95/35374 PCTIVA95/O(0361 -22min. at 400 g, the supernatant was removed and 50 pl of either culture medium or 1:10 dilution of rabbit complement (Cederlane Laboratories, Hornby, ON, Canada) was added in to each well. Incubation was continued for min. at 370C. After the incubation, the plate was centrifuged for 5 min. at 400 g, 25 pl of supernatant was removed and placed on ice. At the end of the analysis, a sample of cell suspension was stained with an equal volume of 0.2% trypan blue, and the percentage of viable cells was enumerated in a hemocytometer. The mean viabilities of duplicate samples were calculated. The percentage of specific cytotoxicity due to MAb was determined according to the formula: of viable cells in C controlcytotoxicity of viable cells in test sample of viable cells in C control The results are summarized in Table 4.
F
WO 95/35374 PCT/CA95/0036 -23- Table 4: Complement Dependent Cytotoxicity of Human MAb BT32/A6 Percentage of Cytotoxicity Concentration of HMAb (gg/ml) 10 Cell Lines Glioblastoma SK-MG-1 MAb
C
U 118 MAb
C
Ca 42 4 NDb
ND
Neuroblastoma SK-S-NH MAb C 23 20 18 C 17 17 17 Normal Human Cells PBL MAb C 8 7 7 C 6 6 6 Footnotes: “rabbit complement, bnot done.
Characterization of HMAbs BT32/A6 and BT34/A5 DNA sequences were obtained for the variable regions of the light and heavy chains of HMAbs BT32/A6 and BT34/A5 using standard procedures (Le Boeuf et al. (1989), Schroeder et al. (1990)). Thus, mRNA was extracted from hybridoma cell lines BT32/A6 and BT34/A5 and V-region cDNA was amplified using PCR with primers specific for V-region sequences. Suitable cloning expression vectors were prepared and bacterial cultures were grown in LB medium containing ampicillin. Minipreps of dsDNAs were prepared WO 95/35374 PCT/CA95/0036 I -24by the ALKALI method (Molecular Cloning, Maniatis) and DNA was sequenced using the United States Biochemical kit and protocol.
As the DNA sequences of the light and heavy chain constant regions of human IgMs are known, the sequencing of the variable regions of a human IgM results in full characterization.
The various sequences are presented in the Sequence Listing. The HMAb BT34/A5 has a cDNA coding sequence for the chain of 363 nucleotides (SEQ ID NO:1). A partial signal sequence for BT34/A5 of 30 nucleotides (SEQ IQ NO:2) was also elucidated. These cDNA coding sequences indicate that BT34/A5 consists of 121 amino acid residues (SEQ ID NO:3), and the partial signal sequence consists of 10 amino acid residues (SEQ ID NO:4).
The chain of HMAb BT34/A5 has a cDNA coding sequence of 333 nucleotides (SEQ ID NO:5), coding for a protein chain of 111 amino acid residues (SEQ ID NO:6). A partial signal sequence of 30 nucleotides (SEQ ID NO:7) coding for 10 amino acid residues (SEQ ID NO:8) was also elucidated.
The HMAb BT32/A6 VLK) chain has a cDNA coding sequence of 339 nucleotides (SEQ ID NO:9) coding for a protein chain of 113 amino acid residues (SEQ ID NO:10). A signal sequence of 60 nucleotides (SEQ ID NO:11) coding for amino acid residues (SEQ ID NO:12) was elucidated.
The sequences for the chain of the HMAb BT32/A6 were not completely elucidated, with only partial sequencing in the FR1 and FR4 regions. Thus, the partial cDNA coding sequence for this chain is 360 nucleotides (SEQ ID NO:13) coding for a protein chain of 120 amino acid residues (SEQ ID NO:14).
1 WO 95/3537,1 PCT/CA95/003(1 Initial analysis of these sequence results indicates, at least for of BT32/A6, that the antigen binding site is likely in the CDR3 region, amino acids 92- 114 of SEQ ID NO:14.
The hypervariable or complementarity determining regions (CDRs) of the V chains characterized herein are of particular interest as at least some of them are involved in binding antigen. Thus, the invention includes those molecules having immunoglobulin light and heavy variable chains with CDRs being at least 90% homologous with those CDRs characterized herein.
Thus, the VH( chain of HMAb BT34/A5 has the following complementarity determining regions (CDR): CDR 1 SEQ ID CDR 2 SEQ ID NO:16 CDR 3 SEQ ID NO:17 The V,L(x chain of HMAb BT34/A5 has the following CDRs: CDR 1 SEQ ID NO:18 CDR 2 SEQ ID NO:19 CDR 3 SEQ.ID The VH,) chain of HMAb BT32/A6 has the following CDRs: CDR 1 SEQ ID NO:21 CDR 2 SEQ ID NO:22 CDR 3 SEQ ID NO:23 The VL(K) chain of HMAb BT32/A6 has the following CDRs: CDR 1 SEQ ID NO:24 CDR 2 SEQ ID CDR 3 SEQ ID NO:26 i I 16Y saraaPrr~a~-~- l I\–sl la~ ll WO 95/35374 PCT/CA95/00361 Discussion The data present herein show that the expression of the antigen recognized by MAb BT32/A6 is exceptional in that it appears that virtually 100% of SK-MG-1 cells (as determined by FCM) express this antigen regardless of their culture density, culture viability, or cell cycle state. Due to the similarity of HMAb BT34/A5 to BT32/A6, a similar result would be expected for BT34/A5 binding.
The reason this antigen recognition is so remarkable is that malignant gliomas are usually thought of as heterogeneous tumors, and it is exceptional to find a common biological thread among all cells in a given tumor.
Indeed, heterogeneity is a common feature of most if not all neoplastic tissues; it may arise through ‘normal’ mechanisms, or result from an increased genetic instability which is intrinsic to the cancer cell. It has been suggested that in the strictest sense, the term ‘tumor heterogeneity’ should be reserved for situations in which there are differences in cell lineage. Cell cycle effects and other epigenetic phenomena add another level of complexity to the picture of tumor cell variability.
Few tumor-specific MAbs exist that recognize 100% of all neoplastic cells, even in a highly passaged line such as SK-MG-1. In an excellent study utilizing computerassisted cytofluorometry, Stavrou, et al. 1989, reported on two such MAbs, MUC 8-22 and MUC 2-63, which recognize up to 100% of certain cultured astrocytoma and glioblastoma lines 86HG-63, 86HG-39), although such observations were rare. The same group of authors found that the percentage of cells which showed antibody binding varied from one cell line to another and even within individual cell lines at different passage levels.
A human MAb (CLN-IgG) that recognizes a gliomaassociated antigen whose surface expression is influenced
I
WO 95/353741 PCT/CA95/00361 -27by cell cycle state has been reported by Kokunai, et al.
1990. Expression of the antigen recognized by CLN-IgG was shown to be markedly increased on the surface of glioma cells in the G 2 /M phase of the cell cycle, but significantly reduced on cells in the G 0 phase. These findings have important therapeutic implications, since most conventional adjuvant therapies radiotherapy, chemotherapy) are directed towards cycling tumor cells, and it is among the more mitotically quiescent, noncycling cell populations that the tumor stem cells are thought to reside. If MAb-based tumor immunotherapy is to succeed, it must target tumor cells that are mitotically quiescent as well as those that are actively dividing.
This requirement means that the MAb must be directed to lineage-dependent rather than cell-cycle dependent tumorassociated antigens.
So far, there has only been one other report of a MAb directed to an astrocytoma-associated antigen which is expressed in a cell-cycle independent fashion (Sarawar et al. 1991), as demonstrated by FCM analysis. This particular MAb, designated M2, is a murine MAb that recognizes antigenic determinants expressed on a wide variety of central nervous system tumors, including: juvenile astrocytomas, ependymomas, medulloblastomas, meningiomas, and oligodendrogliomas. M2 was also found to react with astrocytes in all areas of normal human adult brain, as well as with a small number of neurons, and with fetal brain.
The human MAb, BT32/A6, therefore, recognizes a cell cycle independent, glioma-associated antigen which is expressed on 100% of viable SK-MG-1 cells, but not on cultured normal human astrocytes. Expression of the BT32/A6 antigen is unaffected by cell density, growth rate, or culture viability. This characteristic makes MAb BT32/A6, and by analogy other HMAbs similarly obtained, I
_I
WO 95/35374 PCT/CA95/00361 -28well suited for adjunctive immunotherapy in the treatment of human malignant gliomas. By constructing immunotoxins based on the variable region sequences of MAb BT32/A6, it should be possible to target both proliferating G 2
/M)
as well as non-proliferating glioma cells in vivo.
WO 95/35374 PCT/CA95/00361 -29-
REFERENCES
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Matthews, and D.D. Bigner (1983). Human gliomamesenchymal extracellular matrix antigen defined by monoclonal antibody. Cancer Research 43:2796-2805.
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Weigert (1981). Aberrant rearrangements contribute significantly to the allelic exclusion of immunoglobulin gene expression. Nature 290:372-375.
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De Barnardo, and T.F. Davies (1987). A study of human-human hybridomas from patients with autoimmune thyroid disease. J. Clin. Immunol. 7:71-77.
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Kokunai Tamaki Matsumoto S (1990): Antigen related to cell proliferation in malignant gliomas recognized by a human monoclonal antibody, J. Neurosurg 73:901-908.
WO 95/35374 PCT/CA95/00361 Korsmeyer, A. Arnold, A. Bakhshi, J.V. Ravetch, U. Siebenlist, P.A. Hieter, S.O. Sharrow, T.W. LeBien, J.H. Kersey, D.G. Poplack, P. Leder, and T.A. Waldmann (1983). Immunoglobulin gene rearrangement and cell surface antigen expression in acute lymphocytic leukemias of T cell and B cell precursor origins. J. Clin. Invest.
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Peiper, and J.E. Blalock (1989). Cloning and sequencing of immunoglobulin variable-region genes using degenerate oligodeoxyribonucleotides, Gene 82:371-77.
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Waldmann, and P. Leder (1981). Structure of the human immunoglobulin p locus: characterization of embryonic and rearranged J and D genes. Cell 27:583-591.
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WO 95/35374 PCT/CA95/00361 32 SEQUENCE LISTING GENERAL INFORMATION: APPLICANT: Michael D. Dan (ii) TITLE OF INVENTION: HUMAN MONOCLONAL ANTIBODIES SPECIFIC TO CELL CYCLE-INDEPENDENT GLIOMA SURFACE ANTIGEN (iii) NUMBER OF SEQUENCES: 26 (iv) CORRESPONDENCE ADDRESS: ADDRESSEE: Ridout Maybee STREET: 2300 Richmond-Adelaide Centre 101 Richmond Street West CITY: Toronto STATE: Ontario COUNTRY: Canada ZIP CODE: M5H 2J7 COMPUTER READABLE FORM: MEDIUM TYPE: Diskette 3.5 inch, 1.4 Mb storage COMPUTER: IBM PC Compatible OPERATING SYSTEM: MS-DOS 6.00 SOFTWARE: ASCII Editor (vi) CURRENT APPLICATION DATA: APPLICATION NUMBER: FILING DATE:
CLASSIFICATION:
(vii) PRIOR APPLICATION DATA: Not applicable (viii) ATTORNEY/AGENT INFORMATION: NAME: Lake, James R.
REGISTRATION NUMBER: 31081 REFERENCE/DOCKET NUMBER: NOVOW/1C (ix) TELECOMMUNICATION INFORMATION: TELEPHONE: (416) 868-1482 TELEFAX: (416) 362-0823 INFORMATION FOR SEQ ID NO:1: SEQUENCE CHARACTERISTICS: LENGTH: 363 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:1: CAG GTT CAG CTG GTG CAG TCT GGA GCT GAG GTG AAG AAG CCT GGG GCC 48 TCA GTG AAA GTC TCC TGC AAG GCT TCT GGT TAC ACC TTC ACC ACC TAT 96 GGT CTC AGC TGG GTG CGA CAG GCC CCT GGA CAA GGG CTT GAG TGG ATG 144 GGA TGG ATC AGC GCT CAC AAT GGT AAC ACA AAC TCT GCA CAG AAG TTC 192 SUBSTITUTE SHEET WO 95/35374 rCT/CA95/00361 33 CAG GGC AGA GTC TCC ATG ACC ACA GAC ACA TCC ACG AGC ACA GCC TAC 240 ATG GAG GTG AGG AGC CTC AGA TCT GAC GAC ACG GCC GTG TAT TAC TGT 288 GCG CGA GTC GGG GTA TGG GAC CTA TTG AAC TAC TTT GAC TAC TGG GGC 336 CAG GGA ACC CTG GTC ACC GTC TCC TCA 363 INFORMATION FOR SEQ ID NO:2: SEQUENCE CHARACTERISTICS: LENGTH: 30 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2: TTG GTG GCA GCA GCA. ACA GGT GCC CAC TCC INFORMATION FOR SEQ ID NO:3: SEQUENCE CHARACTERISTICS: LENGTH: 121 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:3: Gin Val Gin Leu Val Gin Ser Gly Ala Glu Val Lys Lys Pro Gly Ala 10 Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr Thr Tyr 25 Gly Leu Ser Trp Val Arg Gin Ala Pro Gly Gin Gly Leu Glu Trp Met 40 Gly Trp Ile Ser Ala His Asn Gly Asn Thr Asn Ser Ala Gin Lys Phe 55 Gin Gly Arg Val Ser Met Thr Thr Asp Thr Ser Thr Ser Thr Ala Tyr 70 75 Met Glu Val Arg Ser Leu Arg Ser Asp Asp Thr Ala Val Tyr Tyr Cys 90 Ala Arg Val Gly Val Trp Asp Leu Leu Asn Tyr Phe Asp Tyr Trp Gly 100 105 110 Gin Gly Thr Leu Val Thr Val Ser Ser 115 120 INFORMATION FOR SEQ ID NO:4: SEQUENCE CHARACTERISTICS: LENGTH: 10 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:4: Leu Val Ala Ala Ala Thr Gly Ala His Ser INFORMATION FOR SEQ ID SUBSTITUTE SHEET
I
WO 95/35374 PCT/CA95/00361 34 SEQUENCE CHARACTERISTICS: LENGTH: 333 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID CAG TCT GTG CTG ACT CAG CCA CCC TCA GCG TCT GGG ACC CCC GGG CAG 48 AGG GTC ACC ATC TCT TGT TCT GGA AGC AGC TCC AAC ATC GGA ACT AAT 96 ACT GTA AAC TGG TAC CTG CAG CTC CCA GGA ACG GCC CCC AAA GTC CTC 144 ATC TAT AGT AAT AAT CAG CGG CCC TCA GGG GTC CCT GAC CGA TTC TCT 192 GGC TCC AAG TCT GGC ACC TCA GCC TCC CTG GCC ATC AGT GGA CTC CAG 240 TCT GAG GAT GAG GCT GAT TAT TTC TGT GCA GCA TGG GAT GAC AGC CTG 288 AAA GGT GTG GTA TTC GGC GGA GGG ACC AAG CTG ACC GTC CTA GGT 333 INFORMATION FOR SEQ ID NO:6: SEQUENCE CHARACTERISTICS: LENGTH: 111 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:6: Gin Ser Val Leu Thr Gin Pro Pro Ser Ala Ser Gly Thr Pro Gly Gin 10 Arg Val Thr Ile Ser Cys Ser Gly Ser Ser Ser Asn Ile Gly Thr Asn 25 Thr Val Asn Trp Tyr Leu Gin Leu Pro Gly Thr Ala Pro Lys Val Leu 40 Ile Tyr Ser Asn Asn Gin Arg Pro Ser Gly Val Pro Asp Arg Phe Ser 55 Gly Ser Lys Ser Gly Thr Ser Ala Ser Leu Ala Ile Ser Gly Leu Gin 70 75 Ser Glu Asp Glu Ala Asp Tyr Phe Cys Ala Ala Trp Asp Asp Ser Leu 90 Lys Gly Val Val Phe Gly Gly Gly Thr Lys Leu Thr Val Leu Gly 100 105 110 INFORMATION FOR SEQ ID NO:7: SEQUENCE CHARACTERISTICS: LENGTH: 30 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:7: CTC CTC ACT CAC TGT GCA GGG TCC TGG GCC INFORMATION FOR SEQ ID NO:8: SEQUENCE CHARACTERISTICS: LENGTH: 10 amino acids TYPE: amino acid STRANDEDNESS: not applicable SUBSTITUTE SHEET I WO 95/35374 PCT/CA95/00361 35 TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:8: Leu Leu Thr His Cys Ala Gly Ser Trp Ala INFORMATION FOR SEQ ID NO:9: SEQUENCE CHARACTERISTICS: LENGTH: 339 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:9: GAT ATT GTG ATG ACC CAG ACT CCA CTC TCC CTG CCC GTC ACC CCT GGA GAG CCG GCC TCC ATC TCC TGC AGG TCT AGT CAG AGC CTC TTG GAT AGT GAT GAT GGA AAC ACC TAT TTG GAC TGG TAC CTG CAG AAG CCA GGG CAG TCT CCA CAG CTC CTG ATC TAT ACG CTT TCC TAT CGG GCC TCT GGA GTC CCA GAC AGG TTC AGT GGC AGT GGG TCA GGC ACT GAT TTC ACA CTG AAA ATC AGC AGG GTG GAG GCT GAG GAT GTT GGA GTT TAT TAC TGC ATG CAA CGT ATA GAG TTT CCT TTC ACT TTC GGC GGA GGG ACC AAG GTG GAG ATC 48 96 144 192 240 288 336 339
AAA
(2) INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 113 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear Asp Glu Asp Ser Pro Ile Arg Lys (xi) SEQUENCE Ile Val Met Thr Pro Ala Ser Ile Asp Gly Asn Thr Pro Gln Leu Leu Asp Arg Phe Ser Ser Arg Val Glu Ile Glu Phe Pro 100 DESCRIPTION: SEQ ID Gln Thr Pro Leu Ser Leu Pro 10 Ser Cys Arg Ser Ser Gin Ser 25 Tyr Leu Asp Trp Tyr Leu Gin 40 Ile Tyr Thr Leu Ser Tyr Arg 55 Gly Ser Gly Ser Gly Thr Asp 70 75 Ala Glu Asp Val Gly Val Tyr 90 Phe Thr Phe Gly Gly Gly Thr 105 Val Leu Lys Ala Phe Tyr Lys Thr Leu Pro Ser Thr Cys Val 110 Pro Asp Gly Gly Leu Met Glu Gly Ser Gln Val Lys Gin Ile INFORMATION FOR SEQ ID NO:11: SEQUENCE CHARACTERISTICS: LENGTH: 60 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: line SUBSTITUTE SHEET
Y
WO 95/35374 PCT/CA95/00361 36 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:11: ATG AGG CTC CCT GCT CAG CTC CTG GGG CTG CTA ATG CTC TGG GTC CCT GGA TCC AGT GAG INFORMATION FOR SEQ ID NO:12: SEQUENCE CHARACTERISTICS: LENGTH: 20 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:12: Met Arg Leu Pro Ala Gln Leu Leu Gly Leu Leu Met Leu Trp Val Pro 10 Gly Ser Ser Glu INFORMATION FOR SEQ ID NO:13: SEQUENCE CHARACTERISTICS: LENGTH: 360 base pairs TYPE: nucleic acid STRANDEDNESS: single stranded TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:13:
GGG
GCC
GCT
GGT
AGA
GCT
GAG
GAT
GGA
TCT
CCA
AGC
GAC
GAG
TAC
ATC
GGC
GGA
GGG
ACA
AAT
GAC
TAT
TGG
TTG
TTC
AAG
TAC
TCC
ACG
GAT
GGC
GTC
ACC
GGA
TAC
AAG
GCT
AGT
CAA
CAG
TTC
CTG
GCA
AAC
GTG
AGT
GGG
CCT
AGT
GAA
GAC
ACT
TAT
GGT
ACA
GGG
AGC
TAT
TCC
CTG
TAC
TAT
ACG
GGG
TAT
GTT
GTG
TAT
TGT
TAC
TCC
GCT
TCG
AAG
CTT
GTG
GTT
CTG
ATG
GCT
GGC
CAA
AAA
TCT
AGA
CAC
ATT
AGA
ATG
GAC
CGG
CTC
TGG
AGT
TTC
AGC
AGG
TTC
TCC
GTC
AGT
ACC
AGT
TTA
GGT
TGT
CGC
AAT
ATC
CTG
AAA
GCT
TCA
CAG
GGG
TCC
AGA
GTG
TTT
48 96 144 192 240 288 336 360 INFORMATION FOR SEQ ID NO:14: SEQUENCE CHARACTERISTICS: LENGTH: 120 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:14:
I
Gly Gly Gly Leu Val Gln Pro Gly Gly Ser Leu Arg Leu Ser Cys Ser 10 Ala Ser Gly Phe Thr Phe Ser Ser Tyr Ala Met His Trp Val Arg Gln 25 Ala Pro Gly Lys Gly Leu Glu Tyr Val Ser Ala Ile Ser Ser Asn Gly Gly Ser Thr Phe Tyr Tyr Ala Asp Ser Val Lys Gly Arg 55 SUBSTITUTE SHEET Thr Ile Ser
I
WO 95/35374 PCT/CA95/00361 37 Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu Gin Met Ser Ser Leu Arg 70 75 Ala Glu Asp Thr Ala Val Tyr Tyr Cys Val Lys Asp Arg Leu Lys Val 90 Glu Tyr Tyr Asp Ser Ser Gly Tyr Tyr Val Ser Arg Phe Gly Ala Phe 100 105 110 Asp Ile Trp Gly Gin Gly Thr Thr 115 120 INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 5 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID Thr Tyr Gly Leu Ser INFORMATION FOR SEQ ID NO:16: SEQUENCE CHARACTERISTICS: LENGTH: 17 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DECRIPTION: SEQ ID NO:16: Trp Ile Ser Ala His Asn Gly Asn Thr Asn Ser Ala Gin Lys Phe Gin 10 Gly INFORMATION FOR SEQ ID NO:17: SEQUENCE CHARACTERISTICS: LENGTH: 12 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:17: Val Gly Val Trp Asp Leu Leu Asn Tyr Phe Asp Tyr INFORMATION FOR SEQ ID NO:18: SEQUENCE CHARACTERISTICS: LENGTH: 13 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:18: SUBSTITUTE
SHEET
I
WO 95/35374 PCT/CA95/00361 38 Ser Gly Ser Ser Ser Asn Ile Gly Thr Asn Thr Val Asn INFORMATION FOR SEQ ID NO:19: SEQUENCE CHARACTERISTICS: LENGTH; 7 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:19: Ser Asn Asn Gin Arg Pro Ser INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 11 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DECRIPTION: SEQ ID Ala Ala Trp Asp Asp Ser Leu Lys Gly Val Val INFORMATION FOR SEQ ID NO:21: SEQUENCE CHARACTERISTICS: LENGTH: 5 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:21: Ser Tyr Ala Met His INFORMATION FOR SEQ ID NO:22: SEQUENCE CHARACTERISTICS: LENGTH: 17 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:22: Ala Ile Ser Ser Asn Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys 10 Gly INFORMATION FOR SEQ ID NO:23: SUBSTITUTE SHEET
I
WO 95/35374 ‘CT/CA95/00361 39 SEQUENCE CHARACTERISTICS: LENGTH: 23 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:23: Asp Arg Leu Lys Val Glu Tyr Tyr Asp Ser Ser Gly Tyr Tyr Val Ser 10 Arg Phe Gly Ala Phe Asp Ile INFORMATION FOR SEQ ID NO:24: SEQUENCE CHARACTERISTICS: LENGTH: 17 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:24: Arg Ser Ser Gln Ser Leu Leu Asp Ser Asp Asp Gly Asn Thr Tyr Leu 10 Asp INFORMATION FOR SEQ ID SEQUENCE CHARACTERISTICS: LENGTH: 7 amino acids TYPE: amino acid STRANDEDNESS: not app: TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ Thr Leu Ser Tyr Arg Ala Ser Licable ID INFORMATION FOR SEQ ID NO:26: SEQUENCE CHARACTERISTICS: LENGTH: 9 amino acids TYPE: amino acid STRANDEDNESS: not applicable TOPOLOGY: linear (xi) SEQUENCE DESCRIPTION: SEQ ID NO:26: Met Gin Arg Ile Glu Phe Pro Phe Thr SUBSTITUTE SHEET

Claims (16)

1. An isolated DNA coding for the variable region of the heavy chain, subgroup A, (V H of the human monoclonal antibody BT34/AM having the nucleotide sequence SEQ ID NO:1.

2. An isolated DNA as claimed in claim 1, further comprising a nucleotide signal sequence extending from the end of said DNA, the signal sequence comprising at its 3′ end the nucleotide sequence SEQ ID NO:2.

3. An isolated DNA coding for the variable region of the light chain, subgroup X, of the human monoclonal antibody BT34/A5 having the nucleotide sequence SEQ ID

4. An isolated DNA as claimed in claim 3, further comprising a nucleotide signal sequence extending from the end of said DNA, the signal sequence comprising at its 3’ end the nucleotide sequence SEQ ID NO:7. An isolated DNA coding for the variable region of the heavy chain, subgroup A, of the human monoclonal antibody BT32/A6 comprising the nucleotide sequence SEQ ID NO:13.

6. An isolated DNA coding for the variable region of the light chain, subgroup K, of the human monoclonal antibody BT32/A6 having the nucleotide sequence SEQ ID NO:9.

7. An isolated DNA as claimed in claim 6, further comprising a nucleotide signal sequence extending from the end of said DNA, the signal sequence having the nucleotide sequence SEQ ID NO:11. SUBSTITUTE SHEET I 110iI 1iJI 1092 91f (tM 99911 -41-

8. The immunoglobulin VH,) chain having the amino acid sequence SEQ ID NO: 3.

9. The VH,) chain as claimed in claim 8, further comprising a signal sequence having the amino acid sequence SEQ ID NO:4 at its C-terminal end. An immunoglobulin which binds the glioma-associated cell surface antigen bound by HMAb BT34/A5, said immunoglobulin chain having complementarity determining regions (CDRs) with the amino acid sequences SEQ ID NO: 15 (CDR1), SEQ ID NO: 16 (CDR2) and SEQ ID NO: 17 (CDR3) or sequences being at least 90% homologous therewith.

11. The immunoglobulin VL() chain having the amino acid sequence SEQ ID NO: 6.

12. The V(x chain as claimed in claim 11, further comprising a signal sequence having the amino acid sequence SEQ ID NO: 8 at its C-terminal end.

13. An immunoglobulin which binds the glioma-associated cell surface antigen bound by HMAb BT34/A5, said immunoglobulin VL(X) chain having CDRs with the amino acid sequences SEQ ID NO: 18 (CDR SEQ ID NO: 19 (CDR2) and SEQ ID NO: 20 (CDR 3) or sequences being at least 90% homologous therewith.

14. An immunoglobulin having and VL(x) chains having the amino acid sequences SEQ ID NO: 3 and SEQ ID NO: 6 respectively.

15. An immunoglobulin as claimed in claim 14 which is a monoclonal antibody.

16. An immunoglobulin as claimed in claim 15 of the isotype M,

17. The human monoclonal antibody BT34/A5. 0 3t N0^° P\0 11 110270Wii(A CI M 01/91

42- 18. An immunoconjugate which bind the glioma-associated cell surface antigen bound by HMAb BT34/A5, said immunoconjugate having VH4, chains with CDRs having the amino acid sequences SEQ ID NO: 15 (CDR1), SEQ ID NO: 16 (CDR2) and SEQ ID NO: 17 (CDR3) or sequences being at least 90% homologous therewith, and said immunoconjugate having VL(X) chains with CDRs having the amino acid sequences SEQ ID NO: 18 (CDR1), SEQ ID NO: 19 (CDR2) and SEQ ID NO: 20 (CDR3) or sequences being at least homologous therewith. 19. An immunoglobulin conjugate as claimed in claim 18, which is an immunotoxin. The immunoglobulin chain having the amino acid sequence SEQ ID NO: 14. 21. An immunoglobulin which binds the glioma-associated cell surface antigen bound by HMAb BT32/A6, said immunoconjugate VH(, chain having CDRs with the amino acid 15 sequences SEQ ID NO: 21 (CDR1), SEQ ID NO: 22 (CDR2) and SEQ ID NO: 23 (CDR3) or sequences being at least 90% homologous therewith. 22. The immunoglobulin VL() chain having the amino acid sequence SEQ ID NO: 20 23. The VLM chain as claimed in claim 22, further comprising a signal sequence having S the amino acid sequence SEQ ID NO: 12. 24. An immunoglobulin which binds the glioma-associated cell surface antigen bound by HMAb BT32/A6, said immunoglobulin VL(K) chain having CDRs with the amino acid sequences SEQ ID NO: 24 (CDR1), SEQ ID NO: 25 (CDR2) and SEQ ID NO: 26 (CDR3) or sequences being at least 90% homologous therewith. An immunoglobulin aviig VH(, and VL(K) chains having the amino acid sequences SEQ ID NO: 14 and SEQ ID NO: 10 respectively. S 7 11 M111 IM~I 1011U919 (i I M 11011JI~ 43 26. An immunoglobulin as claimed in claim 25 which is a monoclonal antibody. 27. An immunoglobulin as claimed in claim 26 of the isotype M. 28. The human monoclonal antibody BT32/A6. 29. An immunoconjugate which binds the glioma-associated cell surface antigen bound by HMAb BT32/A6, said immunoconjugate having VH chains with CDRs having amino acid sequences SEQ ID NO: 21 (CDR1), SEQ ID NO: 22 (CDR2) and SEQ ID NO: 23 (CDR3) or sequences being at least 90% homologous therewith, and said immunoconjugate having VLK) chains with CDRs having the amino acid sequences SEQ ID NO: 24 (CDR1), SEQ ID NO: 25 (CDR2) and SEQ ID NO: 26 (CDR3) or sequences being at least homologous therewith. 15 30. An immunoconjugate as claimed in claim 29, which is an immunotoxin. 31. An isolated glioma-associated cell surface antigen which is specifically bound by HMAb BT32/A6 and which antigen is not present on the surfaces of normal human astrocytes, said antigen being expressed during each cell cycle stage. 32. An isolated glioma-associated cell surface antigen which is specifically bound by HMAb BT34/A5 and which antigen is not present on the surfaces of normal human astrocytes, said antigen being expressed during each cell cycle stage. 25 DATED this 9TH day of SEPTEMBER, 1997 MICHAEL D. DAN by DAVIES COLLISON CAVE Patent Attorneys for the Applicants tce i at *I I

AU27092/95A
1994-06-21
1995-06-16
Human monoclonal antibodies specific to cell cycle independent glioma surface antigen

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1994-06-21

US08/264,093

US5639863A
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1994-06-21
1994-06-21
Human monoclonal antibodies specific to cell cycle independent glioma surface antigen

PCT/CA1995/000361

WO1995035374A1
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1994-06-21
1995-06-16
Human monoclonal antibodies specific to cell cycle independent glioma surface antigen

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Human monoclonal antibodies specific to cell cycle independent glioma surface antigen

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